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The programs usage in Scientific publications
List of Plant Regsite database
factors used in TSSP and NSITE-PL programs
FPROM
/ Human promoter prediction [Help]
PATTERN / pattern search
[Help]
TSSP / Prediction of PLANT Promoters
(Using RegSite Plant DB, Softberry Inc.) [Help]
NSITE-PL
/ Recognition of PLANT Regulatory motifs with statistics
(RegSite Plant DB, Softberry Inc.)
[Help]
NSITEM-PL
/ Recognition of PLANT Regulatory motifs conserved in several sequences
(RegSite Plant DB) [Help]
NSITE
/ Recognition of Regulatory motifs (Transfac DB, Biobase
GmbH, ONLY for academic use) [Help]
NSITEM
/ Recognition of Conserved Regulatory motifs (Transfac DB, ONLY for academic use)
[Help]
NSITEH
/ Search for functional motifs conserved in a pair of orthologous sequences
[Help]
POLYAH
/ Recognition of 3'-end cleavage and polyadenilation
region [Help]
TSSG
/ Recognition of human PolII promoter region and start
of transcription [Help]
TSSW
/ Recognition of human PolII promoter region and start
of transcription (Transfac DB, Biobase GmbH, ONLY for academic use) [Help]
BPROM
/ Prediction of bacterial promoters [Help]
PromH(G)
/ Promoter prediction using ortologous sequences in eukaryotic genomes
[Help]
PromH(W)
/ Promoter prediction using ortologous sequences in eukaryotic genomes (only for academic usage)
[Help]
CpGFinder
/ GC-islands finding
[Help]
ScanWM-P
/ Search for weight matrix patterns of plant regulatory sequences
[Help]
Motif Explorer / Motif and promoter visualization
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