| Input | |
| Sequences 1 | Name of the 1-st input file |
| Sequence 2 | Name of the 2-nd input file |
| Output | |
| Result | Name of the output file |
| Options | |
| DataBase | Select one of the site bases:
REGSITE DB (Animals) REGSITE DB (Plants) Animal TFD from Ghosh DB |
| Conservative Level | Conservative Level |
| Mean expected number | Mean expected number. |
| Statistical siginicance level | Statistical siginicance level. |
| Minimal level of homology | Minimal level of homology between Known RE/consensus and motif found. |