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SeqTrans |
| Input | |
| Sequence | Name of the input file. |
| Output | |
| Result | Name of the output file. |
| Options | |
| ORF type | ORF type:
Full translation - *translation of complete nucleotide sequences. As a result of performance of a command ("show output") translation in all given frameworks and chains will be received. Longest frame - *to give out the longest aminoacid sequence which is ends by stop-codon**. As a result of performance of a command the found sequence and full translation in a framework (and chain) for which sequence is found will be received. Longest frame start with ATG - * to give out the longest aminoacid sequence which begins with ATG ** and it is ends by stop-codon**. As a result of performance of a command the found sequence and full translation in a framework (and chain) for which sequence is found will be received. |
| Translation table | Translation table:
Standart (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Protozoan Mitochondrial and other (4) Invertebrate Mitochondrial (5) Ciliate Nuclear and other (6) Echinodermata Nuclear (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15) |
*Translation and search after translation is conducted only in the given chains and frameworks. For example, if the direction of a chain (+/-) and translation in the first framework is chosen, translation and search after translation will be made only for the first framework in (+) and (-) chains.
** in nucleotide sequence.