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Pattern |
| Input | |
| Sequence | Input file - nucleotide sequences in FASTA-format |
| Output | |
| Result | Name of the output file |
| Print N best patterns pairs | Print N best patterns pairs |
| Options | |
| Search in both chain | Search for pattern in both chain |
| Threshold for include fragment | Threshold for include fragment to pattern. |
| Minimal distance for patterns in pair | Minimal distance for patterns in pair |
| Maximal distance for patterns in pair | Maximal distance for patterns in pair |
| Number of stored best patterns | Number of stored best patterns |
| Initial length | Initial length. Minimal value is 3, maximal value is 12. |
| Try to expand | Try to expand to xx position left and right. If this option is switched off, the pattern will not extend in the parties. Default value is 2, minimal value is 1, maximal value is 10. |
| Pair selection methods | Pair selection methods:
Both pattern must present One of pattern must present |