PSI-Blast


Input
SequenceInput file
Blast DB Blast DB file
Hit dataHit File for PHI-BLAST
Alignment data Input Alignment File for PSI-BLAST Restart
Output
Output fileOutput file
Options
Program nameSelect search program:
blastpgp
patmatchp
patmatch
patseedp
patseed
patternp
pattern
seedp
seed
Expectation valueExpectation value default = 10.0
Maximum number of roundsThe maximum number of rounds (default 1; i.e., regular BLAST)
ConstantThe "constant" used in the pseudocount formula specified in the paper (default 10)