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PSI-Blast |
| Input | |
| Sequence | Input file |
| Blast DB | Blast DB file |
| Hit data | Hit File for PHI-BLAST |
| Alignment data | Input Alignment File for PSI-BLAST Restart |
| Output | |
| Output file | Output file |
| Options | |
| Program name | Select search
program: blastpgp patmatchp patmatch patseedp patseed patternp pattern seedp seed |
| Expectation value | Expectation value default = 10.0 |
| Maximum number of rounds | The maximum number of rounds (default 1; i.e., regular BLAST) |
| Constant | The "constant" used in the pseudocount formula specified in the paper (default 10) |