|
|
|
|
MapRep |
| Input | Genome | Name of input genome file |
| Repeat base | Name of input repeat base file (Multifasta in 4-letter alphabet) |
| Base | Select one of the configuration files:
Normal (slow) Rough (fast) |
| Output | |
| Result | Name of output file |
| Format: | Output mode:
Repeat positions Mask repeats by symbol "N" Mask sequence. Sequence - lower case, Repeats - upper case Mask sequence. Sequence - upper case, Repeats - lower case |
| Output string length | Output sequence string length. |
| Options | |
| Minimum repeat length | Minimum repeat length |
| Minimum repeat homology | Minimum repeat homology. |
| Minimum sum block | Minimum sum block repeat length in alignment |
| Minimum repeat number | Minimum repeat number for base entry. |