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MAS5Norm |
| Input | |
| CDF file | The name of the CDF file for experiment set. |
| CEL directory | The name of the directory where all *.cel files can be found. |
| Experiment list file | File with experiment list and their description included into calculation. |
| Output | |
| Result | File with the resulting gene expression data in SelTag format. |
| Options | |
| Signal Only | If this flag set on, only signal values will be at the output. Otherwise, detection and detection p-values will be reported also. |
| Alpha 1 | Alpha 1 parameter for MAS 5.0 algorithm (MAS5.0 default is 0.04). |
| Alpha 2 | Alpha 2 parameter for MAS 5.0 algorithm (MAS5.0 default is 0.06). |
| Background floor | The percent of lowest intencity probes to be considered as background (MAS 5.0 default=2). |
| Zone number | Number of zones (K parameter) in background noise estimation. Default value for MAS 5.0 is 16. |
| Background smooth | The background weight smooth parameter (MAS 5.0 default=100). |
| Target signal | Target value for signal scaling (MAS 5.0 default =500). |
| Tau | Tau parameter (MAS5.0 default is 0.015) |