| Input |
| Sequences set
| Source file with nucleotide sequences in multiFASTA format
Maximum file size is 1 GB.
|
| Output |
| Result
| Name of the output file
|
| Format
|
Result presentation mode examples:
- Output list of low compl. repeat regions
>c20
Masked regions:
p1: 90 p2: 115 l: 26 chain(+) [Low Complexity Region]
p1: 220 p2: 240 l: 23 chain(+) [Low Complexity Region]
p1: - left position of Low Complexity Region
p2: - right position of Low Complexity Region
l: - length of Low Complexity Region
chain(+) - chain direction
- Output sequence, masked lett. replaced with N
>c20
GCCAAGAAGATATGTAGCATTAAGGTTTAGAATACAGGCTTTGAAGTCAAACAGACCAGAGTTAACAACCTCATTTTGTT
TTTATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAAGTTCTAGGGTACATGTGCACAACGTGCAGGTTTGTTACA
TATGTATACATGTGCCATGTTGGTGTGCTGCACCCATTAACTGGACATTTACATTAGGTNNNNNNNNNNNNNNNNNNNNN
CCCTCCTCCCCTTACCCCACAACAGGCCCCGGTGTGTGATGTTCCCCTTCCTGTGTCCAAGTGTTCTCATTGTTCAGTTC
- Output sequence, masked lett. are in upper case
>c20
gccaagaagatatgtagcattaaggtttagaatacaggctttgaagtcaaacagaccagagttaacaacctcattttgtt
tttattttcTTTTTTAAAATTTTTTTAAAATTATActttaagttctagggtacatgtgcacaacgtgcaggtttgttaca
tatgtatacatgtgccatgttggtgtgctgcacccattaactggacatttacattaggtAAAAAAAAAAAAAAAAAAAAA
ccctcctccccttaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcagttc
|
| Options |
| Accurancy
| Select one of the configuration files:
Normal - default configuration
Sensistive - more sensitive configuration resulting in higher masking percent
Rough - more roung configuration resulting in lower masking percent
|
