GetAtoms

Input
Template structure file Data with template protein structure in PDB format
Template chain This parameter specifies chain index in template structure to use as model. It shoud contain 1-letter symbol code or '_' symbol for chain without index (' ') in PDB file.
Alignment file Data with target-template sequence alignment. Target is first sequence in alignment, template is the second.
Alignment format Specifies alignment file format:
Simple alignment format
FASTA format
Local format output by FOLD program
Format of alignment by CE program
Output
Result Output file.
Format Specifies format for output structure file:
PDB format output
AMBER format output
Status file The calculation status file.
Options
Optimization temperature Specifies temperature for MC algorithm of side chain conformation optimization.
Adding hydrogen atoms Specifies the addition of hydrogen atoms to final protein model structure.
Multiple chain processing Specifies the accounting for additional protein chains in template structure. If 'false' only chain specified in "Template chain" parameter left. If 'true', other chains are left in final structure.