Fgenes-m

Pattern-based human multiple variants (alternative splicing) of potential genes in genomic DNA

Method description: Algorithm outputs several (up to 15, though the number can be changed) suboptimal variants of predicted gene structure. It is similar to Fgenes and is based on pattern recognition of different types of exons, promoters and polyA signals and finding optimal combination of them by dynamic programming. Then, a set of gene models along given sequences is constructed.



Fgenes-m description

Fgenes-m parameters